Skip to contents

Impute missing values

Source: R/impute_groups.R
impute_groups.Rd

Impute missing values for each group of samples in a list of SummarizedExperiment objects, with the minimum value in the group.

The input samples can contain replicates, or merged replicates (mean of replicates).

Usage

impute_groups(se_obj_list)

Arguments

se_obj_list

A list of SummarizedExperiment objects, created by split_groups() or merge_replicates(), each corresponds to one group of samples.

Value

A list of SummarizedExperiment objects with the missing values imputed for each group. Each object in the list corresponds to one group of samples.

Examples

data("example")
example_obj <- normalise_to_start(example_obj)
example_obj_list <- split_groups(example_obj)
example_obj_merged_list <- merge_replicates(example_obj_list)
example_obj_merged_imp_list <- impute_groups(example_obj_merged_list)