Plot GO enrichment — plot

Visualization of GO enrichment analysis with dotplot, cnetplot, or emapplot in clusterProfiler

Usage

plot_GO(
  go_list,
  plot_dotplot = TRUE,
  plot_cnetplot = FALSE,
  plot_emapplot = FALSE,
  showCategory_dotplot = 5,
  showCategory_cnetplot = 5,
  showCategory_emapplot = 5,
  fontsize = 8,
  label = "genes",
  ...
)

Arguments

go_list: A list of enriched GO results, output from enrichGO_list()
plot_dotplot: Whether to plot dotplot (default is TRUE)
plot_cnetplot: Whether to plot cnetplot (default is FALSE)
plot_emapplot: Whether to plot emapplot (default is FALSE)
showCategory_dotplot: showCategory parameter of clusterProfiler::dotplot() (default is 5)
showCategory_cnetplot: showCategory parameter of clusterProfiler::cnetplot() (default is 5)
showCategory_emapplot: showCategory parameter of clusterProfiler::emapplot() (default is 5)
fontsize: Font size for the plots (default is 8)
label: Title for the plots (default is "genes")
...: Additional parameters to pass to the plotting functions clusterProfiler::dotplot(), clusterProfiler::cnetplot(), or clusterProfiler::emapplot()

Value

A list of plots visualizing the GO enrichment results.

Examples

data(example_go)
plot_GO(example_go$all, plot_dotplot = TRUE,
    plot_emapplot = FALSE, plot_cnetplot = FALSE)
#> $dotplot_BP

#> 
#> $dotplot_CC

#>