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Plot WGCNA results

Source: R/plot_WGCNA.R
plot_WGCNA.Rd

Plot WGCNA module eigengenes and module-group/time correlations based on output of run_WGCNA()

Usage

plot_WGCNA(net, fontsize = 8)

Arguments

net

WGCNA network object output by run_WGCNA()

fontsize

Font size for plots (default is 8)

Value

Plots of WGCNA module dendrogram, module eigengenes, pairwise scatterplots of eigengenes, clustering of module eigengenes, and module-trait correlation heatmap

References

https://github.com/edo98811/WGCNA_official_documentation/blob/main/FemaleLiver-03-relateModsToExt.R

Examples

data(example_obj)
example_obj <- normalise_to_start(example_obj)
#> Normalising to group baseline at each feature's first non-NA time point.

data("example_net")
plot_WGCNA(example_net, fontsize = 8)

#> Warning: argument 1 does not name a graphical parameter
#> Warning: argument 1 does not name a graphical parameter
#> Warning: argument 1 does not name a graphical parameter
#> Warning: argument 1 does not name a graphical parameter
#> Warning: argument 1 does not name a graphical parameter
#> Warning: argument 1 does not name a graphical parameter