Dataset for TiDEomics tutorial, sample information — tutorial_sample_info • TiDEomics

A subset of GSE263759 data set published in Integrated time-series analysis and high-content CRISPR screening delineate the dynamics of macrophage immune regulation

Usage

data(tutorial_sample_info)

Format

A data.frame with 40 rows and 5 variables:

Sample: Sample ID
Group: Experimental group (untreated, different treatments)
Time: Time point
Replicate: Replicate ID for each group and time point
Batch: Batch information

Source

GSE263759

Details

Code for preparing the data is available in data-raw/tutorial_input.R

Ensembl IDs were mapped to symbols, genes with all zero counts were excluded.
Use time 0 untreated samples for other groups' time 0.
Include "untreated", "IFNbeta", "IFNgamma", "LPS" groups.
Sample 500 random genes.